It sounds like you've ramped the intensity up too quickly. All coaching schedules on here are generic, they obviously have to be.... and so, sticking to them by the letter isn't right for everyone. Listen to your body; if you need a few days off or to cut back on you weekly mileage... do so.
Imo; the body takes a lot of training over a long period of time to find the runner inside. It is an endurance sport after all. Hope you feel better soon. 
Oh and use recovery drinks.