Cougie - which do you consider you are better at?
I understand your argument about the muscle groups and I know that a fair bit of oxygen has been shown to be consumed by both the arms and torso when you run, but on the other hand if that isn't needed during the bike then your heart can concentrate on pumping mostly to the legs, provided you've capilliarised the leg muscles sufficiently, so shouldn't the figures even out?
sorry if I'm being dense.