The best ones for your knes will be shoes that fit properly and provide the correct amount of support.
I wore neutral running shoes for years (due to being told by local sports shop I was a neutral runner) and got all sorts of injuries over the years (shin splints, ITBS, Achilles tendonitis etc)
Eventually a physio videoed my running gait on a treadmill and advised support shoes for over pronation. Since then I've had far fewer issues.
So go to either a decent sports shoe specialist or a physio with running knowledge to get analysed. I find that brand X vs brand Y makes very little difference as long as you have got a shoe that supports you properly.
Got a lump appeared on my achilles tendon. Had a physio at the local gym have a look at it, and he says it is tendonitis caused by collapsing arches (which in turn cause me to over-pronate and twist my foot).
He says to ice it and to do calf stretches, both of which I am doing, and not to run on it until the lump has gone.
Problem is that, after three weeks there is no sign of any change in the lump. It doesn't hurt when I walk or when running (only hurts when I squeeze the lump). Is it just a waiting game, or have I got so damaged that it is never likely to go?